Publications
2023
Fourth Report on Chicken Genes and Chromosomes 2022
Jacqueline Smith, James M. Alfieri, Nick Anthony, Peter Arensburger, Giridhar N. Athrey, Jennifer Balacco, Adam Balic, Philippe Bardou, Paul Barela, Yves Bigot, Heath Blackmon, Pavel M. Borodin, Rachel Carroll, Meya C. Casono, Mathieu Charles, Hans Cheng, Maddie Chiodi, Lacey Cigan, Lyndon M. Coghill, Richard Crooijmans, Neelabja Das, Sean Davey, Asya Davidian, Fabien Degalez, Jack M. Dekkers, Martijn Derks, Abigail B. Diack, Appolinaire Djikeng, Yvonne Drechsler, Alexander Dyomin, Olivier Fedrigo, Steven R. Fiddaman, Giulio Formenti, Laurent A.F. Frantz, Janet E. Fulton, Elena Gaginskaya, Svetlana Galkina, Rodrigo A. Gallardo, Johannes Geibel, Almas Gheyas, Cyrill John P. Godinez, Ashton Goodell, Jennifer A.M. Graves, Darren K. Griffin, Bettina Haase, Jian-Lin Han, Olivier Hanotte, Lindsay J. Henderson, Zhuo-Cheng Hou, Kerstin Howe, Lan Huynh, Evans Ilatsia, Erich Jarvis, Sarah M. Johnson, Jim Kaufman, Terra Kelly, Steve Kemp, Colin Kern, Jacob H. Keroack, Christophe Klopp, Sandrine Lagarrigue, Susan J. Lamont, Margaret Lange, Anika Lanke, Denis M. Larkin, Greger Larson, John King N. Layos, Ophélie Lebrasseur, Lyubov P. Malinovskaya, Rebecca J. Martin, Maria Luisa Martin Cerezo, Andrew S. Mason, Fiona M. McCarthy, Michael J. McGrew, Jacquelyn Mountcastle, Christine Kamidi Muhonja, William Muir, Kévin Muret, Terence Murphy, Ismael Ng’ang’a, Masahide Nishibori, Rebecca E. O’Connor, Moses Ogugo, Ron Okimoto, Ochieng Ouko, Hardip R. Patel, Francesco Perini, María Inés Pigozzi, Krista C. Potter, Peter D. Price, Christian Reimer, Edward S. Rice, Nicolas Rocos, Thea F. Rogers, Perot Saelao, Jens Schauer, Robert Schnabel, Valerie Schneider, Henner Simianer, Adrian Smith, Mark P. Stevens, Kyle Stiers, Christian Keambou Tiambo, Michele Tixier-Boichard, Anna A. Torgasheva, Alan Tracey, Clive A. Tregaskes, Lonneke Vervelde, Ying Wang, Wesley C. Warren, Paul D. Waters, David Webb, Steffen Weigend, Anna Wolc, Alison E. Wright, Dominic Wright, Zhou Wu, Masahito Yamagata, Chentao Yang, Zhong-Tao Yin, Michelle C. Young, Guojie Zhang, Bingru Zhao, Huaijun Zhou
Cytogenetic and Genome Research
2023
Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture
Jennifer R. S. Meadows, Jeffrey M. Kidd, Guo‑Dong Wang , Heidi G. Parker, Peter Z. Schall, Matteo Bianchi, Matthew J. Christmas, Katia Bougiouri, Reuben M. Buckley, Christophe Hitte, Anthony K. Nguyen, Chao Wang, Vidhya Jagannathan, Julia E. Niskanen, Laurent A. F. Frantz, Meharji Arumilli, Sruthi Hundi, Kerstin Lindblad‑Toh, Catarina Ginja, Kadek Karang Agustina, Catherine André, Adam R. Boyko, Brian W. Davis, Michaela Drögemüller, Xin‑Yao Feng, Konstantinos Gkagkavouzis, Giorgos Iliopoulos, Alexander C. Harris, Marjo K. Hytönen, Daniela C. Kalthoff, Yan‑Hu Liu, Petros Lymberakis, Nikolaos Poulakakis, Ana Elisabete Pires, Fernando Racimo, Fabian Ramos‑Almodovar, Peter Savolainen, Semina Venetsani, Imke Tammen, Alexandros Triantafyllidis, Bridgett vonHoldt, Robert K. Wayne, Greger Larson, Frank W. Nicholas, Hannes Lohi, Tosso Leeb, Ya‑Ping Zhang and Elaine A. Ostrander
Genome Biology 24:187
2023
Nine lives: A biologist explores the cat’s origins, evolution, and complicated history with humans
Greger Larson
Science 380 (6650): 1113
2022
Dual ancestries and ecologies of the Late Glacial Palaeolithic in Britain
Sophy Charlton, Selina Brace, Mateja Hajdinjak, Rebecca Kearney, Thomas Booth, Hazel Reade, Jennifer A. Tripp, Kerry L. Sayle, Sonja B. Grimm, Silvia M. Bello, Elizabeth A. Walker, Alexandre Gilardet, Philip East, Isabelle Glocke, Greger Larson, Tom Higham, Chris Stringer, Pontus Skoglund, Ian Barnes and Rhiannon E. Stevens
Nature Ecology & Evolution 6: 1658–1668
2022
Editorial: Early Human Colonization of Remote Indian Ocean Islands and Its Ecological Impacts
Atholl Anderson, Geoffrey Clark, Simon Haberle, Greger Larson and Krish Seetah
Frontiers in Ecology and Evolution 10: 915306
2022
Grey wolf genomic history reveals a dual ancestry of dogs
Anders Bergström, David W. G. Stanton, Ulrike H. Taron, Laurent Frantz, Mikkel-Holger S. Sinding, Erik Ersmark, Saskia Pfrengle, Molly Cassatt-Johnstone, Ophélie Lebrasseur, Linus Girdland-Flink, Daniel M. Fernandes, Morgane Ollivier, Leo Speidel, Shyam Gopalakrishnan, Michael V. Westbury, Jazmin Ramos-Madrigal, Tatiana R. Feuerborn, Ella Reiter, Joscha Gretzinger, Susanne C. Münzel, Pooja Swali, Nicholas J. Conard, Christian Carøe, James Haile, Anna Linderholm, Semyon Androsov, Ian Barnes, Chris Baumann, Norbert Benecke, Hervé Bocherens, Selina Brace, Ruth F. Carden, Dorothée G. Drucker, Sergey Fedorov, Mihály Gasparik, Mietje Germonpré, Semyon Grigoriev, Pam Groves, Stefan T. Hertwig, Varvara V. Ivanova, Luc Janssens, Richard P. Jennings, Aleksei K. Kasparov, Irina V. Kirillova, Islam Kurmaniyazov, Yaroslav V. Kuzmin, Pavel A. Kosintsev, Martina Lázničková-Galetová, Charlotte Leduc, Pavel Nikolskiy, Marc Nussbaumer, Cóilín O’Drisceoil, Ludovic Orlando, Alan Outram, Elena Y. Pavlova, Angela R. Perri, Małgorzata Pilot, Vladimir V. Pitulko, Valerii V. Plotnikov, Albert V. Protopopov, André Rehazek, Mikhail Sablin, Andaine Seguin-Orlando, Jan Storå, Christian Verjux, Victor F. Zaibert, Grant Zazula, Philippe Crombé, Anders J. Hansen, Eske Willerslev, Jennifer A. Leonard, Anders Götherström, Ron Pinhasi, Verena J. Schuenemann, Michael Hofreiter, M. Thomas P. Gilbert, Beth Shapiro, Greger Larson, Johannes Krause, Love Dalén & Pontus Skoglund
Nature (607): 313–320
2022
HAYSTAC: A Bayesian framework for robust and rapid species identification in highthroughput sequencing data
Evangelos A. Dimopoulos, Alberto Carmagnini, Irina M. Velsko, Christina Warinner, Greger Larson, Laurent A. F. Frantz, Evan K. Irving-Pease
PLoS Comput Biol 18(9): e1010493
2022
Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids
Jocelyn Plassais, Bridgett M. von Holdt, Heidi G. Parker, Alberto Carmagnini, Nicolas Dubos, Ilenia Papa, Kevin Bevant, Thomas Derrien, Lauren M. Hennelly, D.Thad Whitaker, Alex C. Harris, Andrew N. Hogan, Heather J. Huson, Victor F. Zaibert, Anna Linderholm, James Haile, Thierry Fest, Bilal Habib, Benjamin N. Sacks, Norbert Benecke, Alan K. Outram, Mikhail V. Sablin, Mietje Germonpré, Greger Larson, Laurent Frantz, and Elaine A. Ostrander
Current Biology 32, 1–9
2022
Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history
He Yu, Alexandra Jamieson, Ardern Hulme-Beaman, Chris J. Conroy, Becky Knight, Camilla Speller, Hiba Al-Jarah, Heidi Eager, Alexandra Trinks, Gamini Adikari, Henriette Baron, Beate Böhlendorf-Arslan, Wijerathne Bohingamuwa, Alison Crowther, Thomas Cucchi, Kinie Esser, Jeffrey Fleisher, Louisa Gidney, Elena Gladilina, Pavel Gol’din, Steven M. Goodman, Sheila Hamilton-Dyer, Richard Helm, Jesse C. Hillman, Nabil Kallala, Hanna Kivikero, Zsófia E. Kovács, Günther Karl Kunst, René Kyselý, Anna Linderholm, Boutheina Maraoui-Telmini ́, Nemanja Marković, Arturo Morales-Muñiz, Mariana Nabais, Terry O’Connor, Tarek Oueslati, Eréndira M. Quintana Morales, Kerstin Pasda, Jude Perera, Nimal Perera, Silvia Radbauer, Joan Ramon, Eve Rannamäe, Joan Sanmartí Grego, Edward Treasure, Silvia Valenzuela-Lamas, Inge van der Jagt, Wim Van Neer, Jean-Denis Vigne, Thomas Walker, Stephanie Wynne-Jones, Jørn Zeiler, Keith Dobney, Nicole Boivin, Jeremy B. Searle, Ben Krause-Kyora, Johannes Krause, Greger Larson, David Orton
Nature Communications 13:2399
2022
Progress in domestication research: Explaining expanded empirical observations
Dorian Q. Fuller, Tim Denham, Logan Kistler, Chris Stevens, Greger Larson, Amy Bogaard, Robin Allaby
Quaternary Science Reviews 296: 107737
2022
Reconstructing the history of helminth prevalence in the UK
Hannah Ryan, Patrik G Flammer, Rebecca Nicholson, Louise Loe, Ben Reeves, Enid Allison, Christopher Guy, Ines Lopez Doriga, Tony Waldron, Don Walker, Claas Kirchhelle, Greger Larson, Adrian L Smith
PLOS Neglected Tropical Diseases 16(4): e0010312
2022
Redefining the timing and circumstances of the chicken’s introduction to Europe and north-west Africa
Julia Best, Sean Doherty, Ian Armit, Zlatozar Boev, Lindsey Büster, Barry Cunliffe, Alison Foster, Ben Frimet, Sheila Hamilton-Dyer, Tom Higham, Ophélie Lebrasseur, Holly Miller, Joris Peters,
Michaël Seigle, Caroline Skelton, Rob Symmons, Richard Thomas, Angela Trentacoste, Mark Maltby, Greger Larson and Naomi Sykes
Antiquity 1-15
2022
Reply to Peng et al.: Chicken tessellation requires more pieces
Joris Peters, Dorian Q. Fuller (傅稻镰), Evan K. Irving-Pease, Ophelie Lebrasseur, Julia Best, Riley Smallman, and Greger Larson
PNAS 119 (44): e2213678119
2022
The biocultural origins and dispersal of domestic chickens
Joris Peters, Ophelie Lebrasseur, Evan K. Irving-Pease, Ptolemaios Dimitrios Paxinos, Julia Best, Riley Smallman, Cecile Callou, Armelle Gardeisen, Simon Trixl, Laurent Frantz, Naomi Sykes, Dorian Q. Fuller, and Greger Larson
PNAS 119 (24): e2121978119
2022
The Global and Western Indian Ocean Dispersal of House Geckos From Asia Using Historical and Mitochondrial DNA Perspectives
Sara Rocha, Alexandra Trinks, D. James Harris, Greger Larson and Anthony S. Cheke
Frontiers in Ecology and Evolution
2021
Ancient genomes reveal structural shifts after the arrival of Steppe-related ancestry in the Italian Peninsula
Tina Saupe, Francesco Montinaro, Cinzia Scaggion, Nicola Carrara, Toomas Kivisild,
Eugenia D’Atanasio, Ruoyun Hui, Anu Solnik, Ophelie Lebrasseur, Greger Larson, Luca Alessandri,
Ilenia Arienzo, Flavio De Angelis, Mario Federico Rolfo, Robin Skeates, Letizia Silvestri, Jessica Beckett,
Sahra Talamo, Andrea Dolfini, Monica Miari, Mait Metspalu, Stefano Benazzi, Cristian Capelli,
Luca Pagani, and Christiana L. Scheib
Current Biology 31, 1–16
2021
Biology’s Best Friend: Bridging Disciplinary Gaps to Advance Canine Science
Caleb M. Bryce, Michael S. Davis, Matthew E. Gompper, Aimee Hurt,
Jeremy M. Koster, Greger Larson, Elaine A. Ostrander, Monique A. R. Udell,
Silvan Urfer, Aaron J. Wirsing and Ana G. Jimenez
Integrative and Comparative Biology 61(1): 76–92
2021
Dire wolves were the last of an ancient New World canid lineage
Angela R. Perri, Kieren J. Mitchell, Alice Mouton, Sandra Álvarez-Carretero, Ardern Hulme-Beaman, James Haile, Alexandra Jamieson, Julie Meachen, Audrey T. Lin, Blaine W. Schubert, Carly Ameen, Ekaterina E. Antipina, Pere Bover, Selina Brace, Alberto Carmagnini, Christian Carøe, Jose A. Samaniego Castruita, James C. Chatters, Keith Dobney, Mario dos Reis, Allowen Evin, Philippe Gaubert, Shyam Gopalakrishnan, Graham Gower, Holly Heiniger, Kristofer M. Helgen, Josh Kapp, Pavel A. Kosintsev, Anna Linderholm, Andrew T. Ozga, Samantha Presslee, Alexander T. Salis, Nedda F. Saremi, Colin Shew, Katherine Skerry, Dmitry E. Taranenko, Mary Thompson, Mikhail V. Sablin, Yaroslav V. Kuzmin, Matthew J. Collins, Mikkel-Holger S. Sinding, M. Thomas P. Gilbert, Anne C. Stone, Beth Shapiro, Blaire Van Valkenburgh, Robert K. Wayne, Greger Larson, Alan Cooper and Laurent A. F. Frantz
Nature
2021
Dog domestication and the dual dispersal of people and dogs into the Americas
Angela R. Perri,Tatiana R. Feuerborn, Laurent A. F. Frantz, Greger Larson, Ripan S. Malhi, David J. Meltzer, and Kelsey E. Witt
Proceedings of the National Academy of Sciences 118 (6): e2010083118
2021
Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos
Mikkel-Holger S. Sinding, Marta M. Ciucani, Jazmín Ramos-Madrigal, Alberto Carmagnini, Jacob Agerbo Rasmussen, Shaohong Feng, Guangji Chen, Filipe G. Vieira, Valeria Mattiangeli, Rajinder K. Ganjoo, Greger Larson, Thomas Sicheritz-Pontén, Bent Petersen, Laurent Frantz, M. Thomas P. Gilbert, and Daniel G. Bradley
iScience 24, 103226
