Publications
2020
863 genomes reveal the origin and domestication of chicken
Ming-Shan Wang, Mukesh Thakur, Min-Sheng Peng, Yu Jiang, Laurent Alain François Frantz, Ming Li, Jin-Jin Zhang, Sheng Wang, Joris Peters, Newton Otieno Otecko, Chatmongkon Suwannapoom, Xing Guo, Zhu-Qing Zheng, Ali Esmailizadeh, Nalini Yasoda Hirimuthugoda, Hidayat Ashari, Sri Suladari, Moch Syamsul Arifin Zein, Szilvia Kusza, Saeed Sohrabi, Hamed Kharrati-Koopaee, Quan-Kuan Shen, Lin Zeng, Min-Min Yang, Ya-Jiang Wu, Xing-Yan Yang, Xue-Mei Lu, Xin-Zheng Jia, Qing-Hua Nie, Susan Joy Lamont, Emiliano Lasagna, Simone Ceccobelli, Humpita Gamaralalage Thilini Nisanka Gunwardana, Thilina Madusanka Senasige, Shao-Hong Feng, Jing-Fang Si, Hao Zhang, Jie-Qiong Jin, Ming-Li Li, Yan-Hu Liu, Hong-Man Chen, Cheng Ma, Shan-Shan Dai, Abul Kashem Fazlul Haque Bhuiyan, Muhammad Sajjad Khan, Gamamada Liyanage Lalanie Pradeepa Silva, Thi-Thuy Le, Okeyo Ally Mwai, Mohamed Nawaz Mohamed Ibrahim, Megan Supple, Beth Shapiro, Olivier Hanotte, Guojie Zhang, Greger Larson, Jian-Lin Han, Dong-Dong Wu and Ya-Ping Zhang
Cell Research (2020) 0:1–9
2020
A mitochondrial genetic divergence proxy predicts the reproductive compatibility of mammalian hybrids
Richard Allen, Hannah Ryan, Brian W. Davis, Charlotte King, Laurent Frantz, Evan Irving-Pease, Ross Barnett, Anna Linderholm, Liisa Loog, James Haile, Ophélie Lebrasseur, Mark White, Andrew C. Kitchener, William J. Murphy and Greger Larson
Proceedings of the Royal Society B 287: 20200690.
2020
Animal domestication in the era of ancient genomics
Laurent A. F. Frantz, Daniel G. Bradley, Greger Larson and Ludovic Orlando
Nature Reviews Genetics
2020
Arctic-adapted dogs emerged at the Pleistocene–Holocene transition
Mikkel-Holger S. Sinding, Shyam Gopalakrishnan, Jazmín Ramos-Madrigal, Marc de Manuel, Vladimir V. Pitulko, Lukas Kuderna, Tatiana R. Feuerborn, Laurent A. F. Frantz, Filipe G. Vieira, Jonas Niemann, Jose A. Samaniego Castruita,
Christian Carøe, Emilie U. Andersen-Ranberg, Peter D. Jordan, Elena Y. Pavlova, Pavel A. Nikolskiy, Aleksei K. Kasparov, Varvara V. Ivanova, Eske Willerslev, Pontus Skoglund, Merete Fredholm, Sanne Eline Wennerberg, Mads Peter Heide-Jørgensen, Rune Dietz, Christian Sonne, Morten Meldgaard, Love Dalén, Greger Larson, Bent Petersen, Thomas Sicheritz-Pontén, Lutz Bachmann, Øystein Wiig,Tomas Marques-Bonet, Anders J. Hansen, M. Thomas P. Gilbert
Science 368: 1495–1499
2020
Brain Size Does Not Rescue Domestication Syndrome
Kathryn A. Lord, Greger Larson, and Elinor K. Karlsson
Trends in Ecology and Evolution, 2763
2020
Building three-dimensional models before destructive sampling of bioarchaeological remains: a comment to Palsdottir et al. (2019)
Allowen Evin, Renaud Lebrun, Marine Durocher, Carly Ameen, Greger Larson and Naomi Sykes
Royal Society Open Science 7: 192034
2020
Epidemiological insights from a large-scale investigation of intestinal helminths in Medieval Europe
Patrik G. Flammer, Hannah Ryan, Stephen G. Preston, Sylvia Warren, Rena´ta Přichystalova´, Rainer Weiss, Valerie Palmowski, Sonja Boschert, Katarina Fellgiebel, Isabelle Jasch-Boley, Madita-Sophie Kairies, Ernst Ru¨mmele, Dirk Rieger, Beate Schmid, Ben Reeves, Rebecca Nicholson, Louise Loe, Christopher Guy, Tony Waldron, Jiř´ı Macha´ček, Joachim Wahl, Mark Pollard, Greger Larson, Adrian L. Smith
PLoS Neglected Tropical Diseases 14(8): e0008600
2020
Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages
Jazmı´n Ramos-Madrigal, Mikkel-Holger S. Sinding, Christian Carøe, Sarah S.T. Mak, Jonas Niemann, Jose A. Samaniego Castruita, Sergey Fedorov, Alexander Kandyba, Mietje Germonpre, Herve Bocherens, Tatiana R. Feuerborn, Vladimir V. Pitulko, Elena Y. Pavlova, Pavel A. Nikolskiy, Aleksei K. Kasparov, Varvara V. Ivanova, Greger Larson, Laurent A.F. Frantz, Eske Willerslev, Morten Meldgaard, Bent Petersen, Thomas Sicheritz-Ponten, Lutz Bachmann, Øystein Wiig, Anders J. Hansen, M. Thomas P. Gilbert, and Shyam Gopalakrishnan
Current Biology 31, 1–9
2020
Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens
Ross Barnett, Michael V. Westbury, Marcela Sandoval-Velasco, Filipe Garrett Vieira, Sungwon Jeon, Grant Zazula, Michael D. Martin, Simon Y.W. Ho, Niklas Mather, Shyam Gopalakrishnan, Jazmı´n Ramos-Madrigal, Marc de Manuel, M. Lisandra Zepeda-Mendoza, Agostinho Antunes, Aldo Carmona Baez, Binia De Cahsan, Greger Larson, Stephen J. O’Brien, Eduardo Eizirik, Warren E. Johnson, Klaus-Peter Koepfli, Andreas Wilting, Jo¨ rns Fickel, Love Dalen, Eline D. Lorenzen, Tomas Marques-Bonet, Anders J. Hansen, Guojie Zhang, Jong Bhak, Nobuyuki Yamaguchi, and M. Thomas P. Gilbert
Current Biology 30, 1–8
2020
Humanity’s Best Friend: A Dog-Centric Approach to Addressing Global Challenges
Naomi Sykes, Piers Beirne, Alexandra Horowitz, Ione Jones, Linda Kalof, Elinor Karlsson, Tammie King, Howard Litwak, Robbie A. McDonald, Luke John Murphy, Neil Pemberton, Daniel Promislow, Andrew Rowan, Peter W. Stahl, Jamshid Tehrani, Eric Tourigny, Clive D. L. Wynne, Eric Strauss and Greger Larson
Animals 10, 502
2020
Origins and genetic legacy of prehistoric dogs
Anders Bergström, Laurent Frantz, Ryan Schmidt, Erik Ersmark, Ophelie Lebrasseur, Linus Girdland-Flink, Audrey T. Lin, Jan Storå, Karl-Göran Sjögren, David Anthony, Ekaterina Antipina, Sarieh Amiri, Guy Bar-Oz, Vladimir I. Bazaliiskii, Jelena Bulatovic´, Dorcas Brown, Alberto Carmagnini, Tom Davy, Sergey Fedorov, Ivana Fiore, Deirdre Fulton, Mietje Germonpré, James Haile, Evan K. Irving-Pease, Alexandra Jamieson, Luc Janssens, Irina Kirillova, Liora Kolska Horwitz, Julka Kuzmanovic´-Cvetkovic´, Yaroslav Kuzmin, Robert J. Losey, Daria Ložnjak Dizdar, Marjan Mashkour, Mario Novak, Vedat Onar, David Orton, Maja Pasaric´, Miljana Radivojevic´, Dragana Rajkovic´, Benjamin Roberts, Hannah Ryan,
Mikhail Sablin, Fedor Shidlovskiy, Ivana Stojanovic´, Antonio Tagliacozzo, Katerina Trantalidou, Inga Ullén, Aritza Villaluenga, Paula Wapnish, Keith Dobney, Anders Götherström, Anna Linderholm, Love Dalén, Ron Pinhasi, Greger Larson, Pontus Skoglund
Science 370, 557–564
2020
Reply to Zeder and Trut et al.: An Attractive Hypothesis in Need of Evidence
Kathryn A. Lord, Greger Larson, and Elinor K. Karlsson
Trends in Ecology and Evolution, 35(8): 651-652
2020
The evolutionary history of extinct and living lions
Marc de Manuela, Ross Barnett, Marcela Sandoval-Velasco, Nobuyuki Yamaguchi, Filipe Garrett Vieira, M. Lisandra Zepeda Mendoza, Shiping Liu, Michael D. Martin, Mikkel-Holger S. Sinding, Sarah S. T. Mak, Christian Carøe, Shanlin Liu, Chunxue Guo, Jiao Zheng, Grant Zazula, Gennady Baryshnikov, Eduardo Eizirik, Klaus-Peter Koepfli, Warren E. Johnson, Agostinho Antunes, Thomas Sicheritz-Ponten, Shyam Gopalakrishnan, Greger Larson, Huanming Yang, Stephen J. O’Brien, Anders J. Hansen, Guojie Zhang, Tomas Marques-Boneta, and M. Thomas P. Gilbert
Proceedings of the National Academy of Sciences 117 (20) 10927-10934
2020
Tracking the Near Eastern origins and European dispersal of the western house mouse
Thomas Cucchi, Katerina Papayianni, Sophie Cersoy, Laetitia Aznar-Cormano, Antoine Zazzo, Régis Debruyne, Rémi Berthon, Adrian Bălășescu, Alan Simmons, François Valla, Yannis Hamilakis, Fanis Mavridis, Marjan Mashkour, Jamshid Darvish, Roohollah Siahsarvi, Fereidoun Biglari, Cameron A. Petrie, Lloyd Weeks, Alireza Sardari, Sepideh Maziar, Christiane Denys, David Orton, Emma Jenkins, Melinda Zeder, Jeremy B. Searle, Greger Larson, François Bonhomme, Jean-Christophe Aufray & Jean-Denis Vigne
Nature Scientific Reports 10: 8276
2019
Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia
Liisa Loog, Olaf Thalmann, Mikkel-Holger S. Sinding, Verena J. Schuenemann, Angela Perri, Mietje Germonpré, Herve Bocherens, Kelsey E. Witt, Jose A. Samaniego Castruita, Marcela S. Velasco, Inge K. C. Lundstrøm, Nathan Wales, Gontran Sonet, Laurent Frantz, Hannes Schroeder, Jane Budd, Elodie-Laure Jimenez, Sergey Fedorov, Boris Gasparyan, Andrew W. Kandel, Martina Lázničková-Galetová, Hannes Napierala, Hans-Peter Uerpmann, Pavel A. Nikolskiy, Elena Y. Pavlova, Vladimir V. Pitulko, Karl-Heinz Herzig, Ripan S. Malhi, Eske Willerslev, Anders J. Hansen, Keith Dobney, M. Thomas P. Gilbert, Johannes Krause, Greger Larson, Anders Eriksson and Andrea Manica
Molecular Ecology 00:1-15
2019
Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe
Laurent A. F. Frantz, James Haile, Audrey T. Lin, Amelie Scheu, Christina Geörg, Norbert Benecke, Michelle Alexander, Anna Linderholm, Victoria E. Mullin, Kevin G. Daly, Vincent M. Battista, Max Price, Kurt J. Gron, Panoraia Alexandri, Rose-Marie Arbogast, Benjamin Arbuckle, Adrian Bӑlӑşescu, Ross Barnett, László Bartosiewicz, Gennady Baryshnikov, Clive Bonsall, Dušan Borić, Adina Boroneanţ, Jelena Bulatović, Canan Çakirlar, José-Miguel Carretero, John Chapman, Mike Church, Richard Crooijmans, Bea De Cupere, Cleia Detry, Vesna Dimitrijevic, Valentin Dumitraşcu, Louis du Plessis, Ceiridwen J. Edwards, Cevdet Merih Erek, Aslı Erim-Özdoğan, Anton Ervynck, Domenico Fulgione, Mihai Gligor, Anders Götherström, Lionel Gourichon, Martien A.M. Groenen, Daniel Helmer, Hitomi Hongo, Liora K. Horwitz, Evan K. Irving-Pease, Ophélie Lebrasseur, Joséphine Lesur, Caroline Malone, Ninna Manaseryan, Arkadiusz Marciniak, Holley Martlew, Marjan Mashkour, Roger Matthews, Giedre Motuzaite Matuzeviciute, Sepideh Maziar, Erik Meijaard, Tom McGovern, Hendrik-Jan Megens, Rebecca Miller, Azadeh Fatemeh Mohaseb, Jörg Orschiedt, David Orton, Anastasia Papathanasiou, Mike Parker Pearson, Ron Pinhasi, Darko Radmanović, François-Xavier Ricaut, Mike Richards, Richard Sabin, Lucia Sarti, Wolfram Schier, Shiva Sheikhi, Elisabeth Stephan, John R. Stewart, Simon Stoddart, Antonio Tagliacozzo, Nenad Tasić, Katerina Trantalidou, Anne Tresset, Cristina Valdiosera, Youri van den Hurk, Sophie Van Poucke, Jean-Denis Vigne, Alexander Yanevich, Andrea Zeeb-Lanz, Alexandros Triantafyllidis, M. Thomas P. Gilbert, Jörg Schibler, Peter Rowley-Conwy, Melinda Zeder, Joris Peters, Thomas Cucchi, Daniel G. Bradley, Keith Dobney, Joachim Burger, Allowen Evin, Linus Girdland-Flink, and Greger Larson
PNAS August 27, 2019 116 (35) 17231-1723
2019
Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health
Elaine A Ostrander, Guo-Dong Wang, Greger Larson, Bridgett M vonHoldt, Brian W Davis, Vidhya Jagannathan, Christophe Hitte, Robert K Wayne, Ya-Ping Zhang,
National Science Review 6(4): 810–824
2019
Dog10K: the International Consortium of Canine Genome Sequencing
Guo-Dong Wang, Greger Larson, Jeffrey M Kidd, Bridgett M vonHoldt, Elaine A Ostrander, Ya-Ping Zhang
National Science Review 0: 1-3
2019
Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage
Irina M. Velsko, James A. Fellows Yates, Franziska Aron, Richard W. Hagan, Laurent A. F. Frantz, Louise Loe, Juan Bautista Rodriguez Martinez, Eros Chaves, Chris Gosden, Greger Larson and Christina Warinner
Microbiome volume 7, Article number: 102 (2019)
2019
Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic
Carly Ameen, Tatiana R. Feuerborn, Sarah K. Brown, Anna Linderholm, Ardern Hulme-Beaman, Ophelie Lebrasseur, Mikkel-Holger S. Sinding, Zachary T. Lounsberry, Audrey T. Lin, Martin Appelt, Lutz Bachmann, Matthew Betts, Kate Britton, John Darwent, Rune Dietz, Merete Fredholm, Shyam Gopalakrishnan, Olga I Goriunova, Bjarne Groennow, James Haile, Jon Hallsteinn Hallsson, Ramona Harrison, Mads Peter Heide-Joergensen, Rick Knecht, Robert J. Losey, Edouard Masson-MacLean, Thomas H. McGovern, Ellen McManus-Fry, Morten Meldgaard, Aslaug Midtdal, Madonna L. Moss, Iurii G. Nikitin, Tatiana Nomokonova, Albina Hulda Palsdottir, Angela Perri, Aleksandr N. Popov, Lisa Rankin, Joshua D. Reuther, Mikhail Sablin, Anna Lisbeth Schmidt, Scott Shirar, Konrad Smiarowski, Christian Sonne, Mary C. Stiner, Mitya Vasyukov, Catherine F. West, Gro Birgit Ween, Sanne Eline Wennerberg, OEystein Wiig, James Woollett, Love Dalen, Anders J. Hansen, M. Thomas P. Gilbert, Benjamin N. Sacks, Laurent Frantz, Greger Larson, Keith Dobney, Christyann M. Darwent and Allowen Evin
Proceedings of the Royal Society B 286: 20191929
